The web server can be used for small-scale data sets (at most 100 variants). The webserver requires a modified FASTA format input, wherein each mutation is represented by wildtype and mutant protein sequences.
The standalone executable can be used for genome-scale data sets. As input, the MutPred-Indel software requires the output file from ANNOVAR's coding_change.pl program. To install and run MutPred-Indel, you will need about 16 GB of hard disk space and about 8 GB RAM. Click on the link below to download.
Before downloading: please read the MutPred-Indel license agreement.